DEEPNANO_BASE..._NO_METRICHOR(1)

💅 DEEPNANO_BASE..._NO_METRICHOR(1) 💅

okay bestie, so you found the deepnano_basecall_no_metrichor page in the User Commands part of the manual, and honestly? it's a whole vibe. sit down, grab a strawberry 🍓, and let's get into it.

✨ NAME ✨

deepnano_basecall_no_metrichor — it's a basecaller for Oxford Nanopore MinION reads, and it runs on deep recurrent neural networks. no cap, that's the whole thing. 🧬

🌸 SYNOPSIS 🌸

usage: deepnano_basecall_no_metrichor [ARGS] [reads [reads ...]]

that's it, that's the shape of it. args first, then as many reads as you want. go off. ✨

🦋 DESCRIPTION 🦋

💖 positional arguments 💖

• reads — the reads themselves, bestie. list them out, as many as you want, they're all getting basecalled. 🌈

🎀 optional arguments 🎀

• -h, --help — show this help message and exit. the classic. the icon. 👑
• --template_net TEMPLATE_NET — path to the network that basecalls the template (and yes, it comes with a reasonable default, so you don't have to hunt for it). 🔥
• --complement_net COMPLEMENT_NET — path to the network that basecalls the complement (also has a reasonable default, she's got you covered). 💜
• --big_net BIG_NET — path to the network that basecalls the 2D (reasonable default again, we love a self-sufficient queen). ✨
• --max_2d_length MAX_2D_LENGTH — the max length for the 2d basecall. like, the absolute limit, don't push her. 💀
• --type TYPE — pick your fighter. one of: template, complement, 2d, all. you can do multiple with a comma, e.g.: template,complement. it sets the type of basecalling output, and it defaults to all. 💅
• --output OUTPUT — output filename. where the magic lands. 📁
• --directory DIRECTORY — the directory where the read files are stored. 🗂️
• --watch WATCH — watched directory. she's watching. 👀

🫶 EXAMPLES 🫶

🌟 using without metrichor 🌟

like this, bestie:

OMP_NUM_THREADS=1 deepnano_basecall_no_metrichor <list of fast5 files>

🌈 if you want to watch a directory 🌈

heads up: watchdog must be installed for this one. no watchdog, no watching, periodt.

OMP_NUM_THREADS=1 deepnano_basecall_no_metrichor --watch <directory name>

👑 SEE ALSO 👑

• deepnano_basecall(1) — her sister. go say hi. 🫶

🌸 AUTHOR 🌸

this manpage was written by Çağrı ULAŞ for the Debian distribution, and can be used for any other usage of the program. iconic behavior, honestly. 💖

🐛 BUGS 🐛

found a bug? report bugs to <https://bitbucket.org/vboza/deepnano/issues> — they'll handle it, fr fr. 🫡

deepnano_basecall_no_metricho... 🌟 February 2017 🌟 DEEPNANO_BASE..._NO_METRICHOR(1)

and that's the page, bestie — that's the version, that's the date, that's the whole manual name up in lights. you're officially a deepnano girlie now 💅✨🧬