CSB-CSFRAG(1)

📦 version 1.2.5, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu resolute, ubuntu stonking

💖 CSB-CSFRAG 💖

okay so bestie, we're in section 1 of the User Commands manual, and this little cutie is called csb-csfrag — she builds a dynamic library of analogous fragments. yes that's the whole vibe. let's get into it 🫶

✨ NAME ✨

csb-csfrag — build a dynamic library of analogous fragments

🌸 DESCRIPTION 🌸

okay so here's the deal, the usage goes like this, no cap:

usage: csb-csfrag [-h] -d DATABASE -s SHIFTS [-w WINDOW] [-t TOP] [-c
CPU]

       [-v VERBOSITY] [-o OUTPUT] [-f] QUERY

CSfrag: build a dynamic library of analogous fragments, given a list of assigned chemical shifts. literally that's her whole job and she ate 💅

🎀 positional arguments:

  • QUERY — the query sequence, and it's a FASTA file bestie, don't hand her anything else 🙈

🦋 optional arguments:

  • -h, --help — shows this help message and then dips. exit stage left. ✨
  • -d DATABASE, --database DATABASE — the PDBS25 database directory, which is the folder containing PDBS25cs.scs. she needs this one, it's not optional, it's giving required 💀
  • -s SHIFTS, --shifts SHIFTS — the assigned chemical shifts table, specifically an NMR STAR file fragment. also mandatory, also not playing around 🌸
  • -w WINDOW, --window WINDOW — sliding window size, and the default is 8 🪟
  • -t TOP, --top TOP — maximum number per starting position, default is 25 👑
  • -c CPU, --cpu CPU — maximum degree of parallelism, default is 4. multitasking queen fr fr 🔥
  • -v VERBOSITY, --verbosity VERBOSITY — verbosity level, default is 1. crank it up if you want her to talk more 🗣️
  • -o OUTPUT, --output OUTPUT — output directory, and the default is . (so like, right here, wherever you're standing) 📁
  • -f, --filtered-map — makes an additional filtered fragment map of centroids. default is False, so it's off unless you ask nicely 💜

🌈 AUTHOR 🌈

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program. king behavior honestly 👑

and that's the whole page bestie, every single flag accounted for, nothing skipped, we keep it thorough around here 💖

csb-csfrag 1.2.5 — November 2017 🎀 that's the version and the date, mwah, bye bestie, go build some fragments 🦋✨

📦 where this page comes from