CSB-BFITE(1)

📦 version 1.2.5, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu resolute, ubuntu stonking

💖 NAME 💖

csb-bfite — models non-rigid displacements in protein ensembles with outlier-tolerant probability distributions 🦋

🌸 DESCRIPTION 🌸

okay bestie, listen up, here's the vibe. the usage goes like this:

usage: csb-bfite [-h] [-c CHAIN] [-s {student,k}] [-a ALIGNMENT] [-o OUTFILE]
       [-n NITER] pdb

it's a Python application for robust structure superposition of an ensemble of structures. and what does bfite do exactly? it models non-rigid displacements in protein ensembles with outlier-tolerant probability distributions. periodt. outliers could never ruin your superposition, that's the whole point 💅

✨ positional arguments ✨

  • pdb — full path to the ensemble 👑

🎀 optional arguments 🎀

  • -h, --help — show this help message and exit. iconic behaviour honestly, ask and you shall receive 🙈
  • -c CHAIN, --chain CHAIN — which chain we're talking about (default=A) 🧚
  • -s {student,k}, --scalemixture {student,k} — the scale mixture distribution, pick your fighter: student or k (default=student) ⭐
  • -a ALIGNMENT, --alignment ALIGNMENT — an alignment in fasta format that defines the equivalent positions. lowkey important detail: it assumes that chain1 is the first sequence of the alignment and chain2 the second sequence 🦋
  • -o OUTFILE, --outfile OUTFILE — the file to which the rotated second structure will be written (default=bfit.pdb) 💖
  • -n NITER, --niter NITER — number of optimization steps (default=200). let it cook 🔥

👑 AUTHOR 👑

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program. slay, thank you for your service 🫶

and that's a wrap, bestie! this page is csb-bfite 1.2.5, dated November 2017, and it lives in section 1 (User Commands). take care of her 💖✨🎀

📦 where this page comes from