CNVKIT_ANTITARGET(1)

💖 CNVKIT_ANTITARGET(1) 💖

okay bestie, welcome to section 1 of the manual — cnvkit_antitarget — and no, you're not lost, this is exactly where you're supposed to be. User Commands, babes. Let's get into it. ✨

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🌸 NAME 🌸

cnvkit_antitarget — derive off-target ("antitarget") bins from target regions. fr fr that's the whole job. 🎯

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🦋 DESCRIPTION 🦋

so the usage line, verbatim, no edits, slay:

usage: cnvkit.py antitarget [-h] [-g FILENAME] [-a AVG_SIZE] [-m MIN_SIZE]
       [-o FILENAME]
              targets

(yeah the formatting's a lil wonky, it's giving "wrapped in the terminal", we move on 💅)

🎀 positional arguments:

• targets — a BED or interval file listing the targeted regions. that's your input, bestie, hand it over 🫶

✨ options:

• -h, --help — show this help message and exit. classic. the "help me I'm baby" flag 😭
• -g FILENAME, --access FILENAME — regions of accessible sequence on chromosomes, as a .bed file, exactly as output by genome2access.py. it's giving "only look where we can actually see" 👀
• -a AVG_SIZE, --avg-size AVG_SIZE — average size of antitarget bins. heads up though: the results are approximate. [Default: 150000]
• -m MIN_SIZE, --min-size MIN_SIZE — minimum size of antitarget bins. smaller regions get dropped, no mercy, gone, bye 🚮 [Default: 1/16 avg size, calculated]
• -o FILENAME, --output FILENAME — output file name. where the goodies go 💾

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👑 that's the whole thing

lowkey iconic that a manpage this short still ate. go make some antitarget bins, main character. 🌈

signing off with love from cnvkit.py antitarget version 0.9.10, dated July 2023 — periodt, that's the footer, mwah 💋🎀💜