BPPANCESTOR(1)

📦 version 2.4.1, in debian bookworm, debian trixie, nixos 26.05, nixpkgs unstable, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

💖 BPPANCESTOR(1) — General Commands Manual 💖

okay bestie, welcome to the glow-up of a page from the General Commands Manual section, local vibes only, and it's literally about bppmixedlikelihood. she's niche, she's powerful, she knows her likelihoods. let's get into it 🦋

✨ NAME ✨

bppmixedlikelihoods — Computation of site per site likelihoods of components of mixture models.

like. that's the whole name. short, sweet, does exactly what it says on the tin 💅

✨ SYNOPSIS ✨

bppmixedlikelihood [options]

that's it. that's the whole invocation. no positional args, just vibes and options 🎀

✨ AVAILABILITY ✨

All UNIX flavors. every single one 🫶 she's portable, she's everywhere, she's not picky about your distro.

✨ DESCRIPTION ✨

okay so here's the tea ☕. On the basis of a mixed model, bppmixedlikelihood computes the likelihood of each site for each submodel of the mixture. site by site. submodel by submodel. no skipping, no shortcuts, she's thorough 💅

and the way she does it?? with homogeneous and non-homogeneous</... wait, keep the tag right: non-homogeneous modelings. both. she contains multitudes ✨

and here's the part that's lowkey iconic: if the mixture is based on several values of a parameter, then the site per site a posteriori probabilities and the average value of this parameter get computed. so you're not just getting likelihoods, you're getting the receipts 🧾🔥

✨ OPTIONS ✨

bestie, real talk — you should refer to info bppsuite or to the online manual of bppsuite for a complete list of available options. this page is giving you the appetiser, not the whole buffet 🍓

  • --noninteractive — generates output for redirection in a file. aka the "don't talk to me, just write it down" mode. perfect for piping, scripting, and generally being a main character who automates things 😌
  • param=file — reads a file for loading options. yes, the option itself is literally param and you point it at a file, and that file is where your options live. one file, all the settings, chef's kiss 👑

✨ AUTHOR ✨

The Bio++ Development Team. they did that. 👑

and that's the whole page, bestie!! this one's from the LOCAL corner of the manual — source/version vibes: LOCAL, dated BPPANCESTOR(1), and it's giving local-only, handcrafted, artisanal manpage energy 🌸 go forth and compute those site per site likelihoods, iykyk 💖✨🎀

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