BP_SEQ_LENGTH(1)

📦 version 1.7.8, in nixos 26.05, nixpkgs unstable

💅 BP_SEQ_LENGTH — bestie's guide to counting your bases ✨

It's the bp_seq_length.pl page, and honestly? It's giving "small script, big helpful energy." 🧬

🌸 NAME 🌸

bp_seq_length.pl — literally just lists the number of bases and the number of sequences in the sequence database files you point it at. That's the whole vibe. 🎀

✨ SYNOPSIS ✨

bp_seq_length.pl *.fa

Yes bestie, that wildcard is doing the heavy lifting. Iconic. 💅

🦋 DESCRIPTION 🦋

So here's the tea ☕ — bp_seq_length.pl reports the total number of residues and the total number of individual sequences chillin' inside a sequence database file you specify. Two numbers, one file, zero drama. Slay. 🔥

🎀 OPTIONS 🎀

  • -f/--format — tells it what database format you're working with ('fasta' is the default, so if you don't say anything it just assumes fasta, cute right). Heads up though: this script uses SeqIO, so your format options are limited to whatever the SeqIO system actually supports. No cap. 🙈

💖 FEEDBACK 💖

💌 Mailing Lists

ngl, user feedback is a whole integral part of how this module and the other Bioperl modules evolve and grow — your participation is so appreciated, fr fr. 🫶 Send your comments and suggestions preferably to the Bioperl mailing list:

bioperl-l@bioperl.org                  - General discussion
http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

🐛 Reporting Bugs

Found a bug? Don't just scream into the void — report it to the Bioperl bug tracking system so the team can keep track of the bugs and their resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

👑 AUTHOR - Jason Stajich 👑

Jason Stajich <jason@bioperl.org> — main character energy, honestly. 🌟

Okay that's the whole page bestie, go count some bases 💜

This lil masterpiece is from perl v5.42.3, dated 2021-02-03 — and it's BP_SEQ_LENGTH (1) for the record. Mwah. 💋

📦 where this page comes from