BP_EXTR...URE_SEQ(1)

📦 version 1.7.8, in nixos 26.05, nixpkgs unstable

🌸 NAME 🌸

okay bestie, welcome to BP_EXTR...URE_SEQ(1) — that’s the manual page, and it lives under User Contributed Perl Documentation. The command itself is bp_extract_feature_seq, and its whole job is literally to extract the corresponding sequence for a specified feature type. sequence-extraction main character energy, no cap. 💅

✨ SYNOPSIS ✨

the whole call looks like this, and yes, copy it exactly:

bp_extract_feature_seq [--format FORMAT] [--feature CDS] [--output FILE]
[--input] FILE

🦋 DESCRIPTION 🦋

This script will extract the sequence for all the features you specify. That’s the vibe: you tell it which features, and it pulls their sequences. periodt. 🫶

🎀 OPTIONS 🎀

  • -i, --input — Specifies the sequence file to be read. iconic little input flag, honestly.
  • --format — Format of the file specified by --input. If not given, it will try to guess the correct format from the file extension. mystery-solving behavior, lowkey.
  • --feature — Feature to be extracted. By default, it extracts the CDS feature. defaults are doing the work.
  • -o, --output — File where the extracted features will be saved. If not specified, STDOUT is used. so if you don’t say where, it just says it out loud, bestie. 🗣️

💖 FEEDBACK 💖

💌 Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated. fr fr, they want your thoughts. 🥺

L<bioperl-l@bioperl.org>                  - General discussion
L<http://bioperl.org/wiki/Mailing_lists>  - About the mailing lists

🐛 Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:

L<https://github.com/bioperl/bioperl-live/issues>

👑 AUTHOR 👑

Jason Stajich <jason-at-bioperl-dot-org> — yes, that exact author credit, bestie. 🫡

okay that’s the page! the footer tea is: source/version perl v5.42.3, dated 2021-02-03, and the page name is BP_EXTR...URE_SEQ(1). mwah 💋✨

📦 where this page comes from