ANTSMOTIONCORRSTATS(1)

✨ NAME ✨

antsMotionCorrStats, part of the ANTS registration suite 💖

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🎀 DESCRIPTION 🎀

💅 COMMAND:

antsMotionCorrStats

okay so bestie, antsMotionCorrStats is the one that takes the parameters antsMotionCorr spits out and turns them into summary measures ✨ it's giving main character energy 🦋

It outputs the mean and max displacements for the voxels inside a provided mask, at each time point 🌸 By default the displacements are measured relative to the reference space, but if you use the framewise option you get displacements between consecutive time points instead 💜

heads up 🙈 it currently only works for linear transforms, so keep that in mind before you go wild

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🌸 OPTIONS 🌸

• -x, --mask mask.nii.gz — drop in a mask image and it'll only compute displacements within that mask 🎯
• -m, --moco MOCOparams.csv — feed it the motion correction parameters that came out of antsMotionCorr 📈
• -o, --output corrected.csv — name the output file you want 📁
• -t, --transform — pick the index for a 3D transform you want output 🧊
• -f, --framewise — go framewise and do the summarywise stats 🔥 <VALUES>: 0
• -s, --spatial-map — get an image of displacement magnitude 🗺️
• -d, --timeseries-displacement — get a 4d time-series image of displacement magnitude 🎞️
• -h — print the help menu, short version 🙋 <VALUES>: 0
• --help — pull up the help menu 📖 <VALUES>: 1, 0

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Okay that's the tea, bestie 💅🦋 antsMotionCorrStats 2.6.4+dfsg, December 2025, stay mooooving 🫶💖