AEVOL(1)

📦 version 5.0, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu resolute

Bestie, welcome to the Aevol user manual, the page that has everything you need 💖

✨ NAME ✨

Aevol is an in silico experimental evolution platform 🧬

📜 SYNOPSIS

aevol_misc_robustness -h | --help
aevol_misc_robustness -V | --version
aevol_misc_robustness [-t TIMESTEP] [-I INDEX | -R RANK] [-n NB_MUTANTS]

🌸 DESCRIPTION

okay so Aevol is a simulation platform where you let populations of digital organisms evolve under different conditions, and then you get to study, experimentally, how the genome and the transcriptome get structured 🧬 it's giving science and main character energy fr 🦋

👑 aevol_misc_robustness

this one is the star of the show 💅 It computes the replication statistics for every individual in a given generation, like the proportion of neutral, beneficial, and deleterious offspring. ngl it's so useful 🫶

Here's how it works: it simulates NBCHILDREN replications for each individual (1000 replications by default), using that individual's mutation, rearrangement and transfer rates. Depending on those rates and the genome size, there can be several mutations per replication, so don't be shocked 💀

The global stats get written to stat/robustness_GENER.out, with one line per individual in the specified generation. The program also gives you detailed stats for one individual (the best one by default) 😭 Those go into stats/replication_GENER.out, with one line per simulated child of that particular individual. Iconic 🔥

🎀 OPTIONS

  • -h, --help — shows you the help text, then bounces 👋
  • -V, --version — shows the version number, then bounces 👋
  • -t, --timestep TIMESTEP — picks the timestep of the individual you're interested in 🧚
  • -I, --index INDEX — picks the individual you're interested in by its index 🍓
  • -R, --rank RANK — picks the individual you're interested in by its rank (default: best individual) 👑
  • -n, --nb-mutants NB_MUTANTS — decides how many mutants get generated 🦋

🔗 SEE ALSO

aevol_create, aevol_modify, aevol_propagate, aevol_run, aevol_misc_ancestor_robustness 💜

That's the tea, bestie 🫶 This is the AEVOL(1) page for aevol 5.0, dropped in July 2016 🌈 Stay iconic and go run some evolution experiments 💅✨

📦 where this page comes from