AEVOL(1)

🌸 User Manual 🌸

okay bestie, welcome to the Aevol manual 💖 this page is all about the aevol_misc_extract tool, so let's get into it 🦋

✨ NAME ✨

Aevol - an in silico experimental evolution platform 🧪

🎀 SYNOPSIS 🎀

aevol_misc_extract -h | --help
aevol_misc_extract -V | --version
aevol_misc_extract [-t TIMESTEP] [-S SEQ_FILE] [-T TRIANGLE_FILE] [-U NUM_GU] [-a]

🧬 DESCRIPTION 🧬

So Aevol is a simulation platform where you get to let populations of digital organisms evolve in different conditions. Then you can study, experimentally, the mechanisms behind how the genome and the transcriptome get structured. It's giving science and I'm obsessed 🔥

aevol_misc_extract

This one pulls out the genotype and/or the phenotype data of individuals in the provided population. It writes everything into text files that are easy to parse with e.g. matlab 💜

🌈 OPTIONS 🌈

• -h, --help — print help, then exit 🙏
• -V, --version — print the version number, then exit 🏷️
• -t TIMESTEP — pick the timestep of the individual(s) you're interested in ⏰
• -S SEQ_FILE — extract sequences into the file SEQ_FILE 🧵
• -T TRIANGLE_FILE — extract phenotypic data into the file TRIANGLE_FILE 📐
• -U NUM_GU — only treat genetic unit #NUM_GU 🎯
  • default: treat all genetic units
• -a — treat all the individuals 🫶
  • default: treat only the best 👑

👑 SEE ALSO 👑

ae_misc_lineage, aevol_create, aevol_modify, aevol_propagate, aevol_run — the whole squad, bestie 💅

That's the aevol 5.0 page from July 2016 all wrapped up 🌈💖 go be a main character 🧚