WARPTIMESERI...ULTITRANSFORM(1)

📦
version 2.6.4 · 2 versions
, in ubuntu resolute

💖 NAME 💖

Okay so this page is for WARPTIMESERI...ULTITRANSFORM(1) (User Commands, bestie 🎀). The actual command is WarpTimeSeriesImageMultiTransform, and it's part of the ANTS registration suite 🧚

🎀 DESCRIPTION 🎀

Here's how you call it. There are two ways, and they're both giving main character energy ✨

Usage 1 (Forward warp): the forward move 🦋

WarpTimeSeriesImageMultiTransform ImageDimension <moving_image.ext> <output_image.ext> -R <fixed_image.ext> <MyWarp.ext> <MyAffine.txt> [interpolation]

Usage 2 (Inverse warp): the backwards glow-up 🔄

WarpTimeSeriesImageMultiTransform ImageDimension <fixed_image.ext> <output_image.ext> -R <moving_image.ext> -i <MyAffine.txt> <MyInverseWarp.ext> [interpolation]

💅 Usage Information

Let's do a vibe check on each argument, bestie:

  • ImageDimension — This one is required, no skipping! It has to be 3 or 4 🔥
  • <moving_image.ext> — The image you want to apply the transformation to. It's either a 3-D image with vector voxels, or a 4D image with scalar voxels 🌸
  • <output_image.ext> — The result! It comes out the same type as your input, but it gets resampled to the domain size set by the -R image ✨
  • <MyWarp.ext> <MyAffine.txt> — You can stack mappings together, and it's lowkey so satisfying. For example: MyAffine.txt MySecondAffine.txt MyWarp.nii.gz MySecondWarp.nii.gz -i MyInverseAffine.txt 🦋

✨ OPTIONS ✨

Here are the flags, and yes, they all slay 💖

  • -i — Uses the inverse of the affine transform that comes right after it 🔄
  • -R — The reference image space you want to warp into 🎯
  • --reslice-by-header — This is the same as -i -mh, or -fh -i -mh if you pair it with -R. It goes off the orientation matrix and origin stored in the image file header 📜
  • --tightest-bounding-box — Computes the tightest bounding box using all the affine transformations. If you pass -R <reference_image.ext>, that overrides it 🫶
    • These options can be used together with -R, and they're typically not used together with any other transforms 🙈

🌈 Interpolation:

Pick your blending style 🍓

  • --use-NN — Nearest Neighbor Interpolator 🧚
  • --use-BSpline — 3rd order B-Spline Interpolation 👑

Okay bestie, that's the whole tea 🫶 This page's source/version is WarpTimeSeriesImageMultiTrans..., dated December 2025. Stay iconic, periodt 💅💖

📦 where this page comes from