JELLY(1)

📦 version 15.8.24, in debian bookworm, ubuntu jammy, ubuntu noble, ubuntu questing, ubuntu resolute, ubuntu stonking

✨ JELLY(1) ✨ General Commands Manual 💖

Bestie, we're about to meet Jelly, the genome assembly upgrading tool 🧬🫶

📜 NAME

Jelly — genome assembly upgrading tool 🦋

💅 DESCRIPTION

Okay so PBJelly is a highly automated pipeline and it is literally obsessed with long sequencing reads 😭 It takes reads like PacBio RS reads or long 454 reads in fasta format and lines them up against high-confidence draft assembles. Then it goes in and fills or reduces as many captured gaps as it possibly can, so you end up with upgraded draft genomes. It's giving main character energy fr fr 👑✨

🎀 OPTIONS 🎀

For a complete description, see the help menu. No cap, that's the full tea 🍓

  • -h, --help — Shows you a quick summary of the options 💜

🦋 SEE ALSO 🦋

/usr/share/doc/pbjelly/JellyReadme.txt 🌸 — this is where the full readme lives, so go check it out if you want the deets bestie 🧚

Bye bestie! This page is from February 2016 and belongs to JELLY(1), so you're all caught up now 💖🌈

📦 where this page comes from