HONEY(1)

✨ HONEY ✨ — General Commands Manual 🦋

Okay bestie, this is the Honey manual page, and the manual name is literally "Honey" 🍓 (the page header says it's HONEY(1) in the General Commands Manual, so it's filed under section 1 💅).

👑 NAME

Honey — genomic structural variation discovery 🧬✨ (it's giving detective work on your DNA 🕵️‍♀️💖)

🎀 SYNOPSIS

Honey {subcommand}[options]

Basically you type Honey, then a subcommand, then whatever options you want. Simple, iconic, no notes 💅.

🌸 DESCRIPTION

Okay so PBHoney is an implementation of two variant-identification approaches 🔥. The whole point is that it's built to exploit the high mappability of long reads, meaning reads that are greater than 10,000 bp 📏✨. Main character energy for long reads, ngl 💜.

PBHoney looks at two things to find structural variants: intra-read discordance 🧩 and soft-clipped tails of long reads ✂️. Both are lowkey genius, and together they're how it spots the big structural changes in your genome 🦋.

👀 OPTIONS

For a complete description, see the help menu 📖 (you'll want to check it out, it's giving full picture 💖).

• -h, --help — Shows you a summary of the options 🫶. Your first stop when you're lost, periodt 💅.

💫 SEE ALSO

• blasr(1) 🧚
• /usr/share/doc/pbhoney/HoneyReadme.txt 📄 (the readme, iykyk 🙈)

Stay sweet, stay curious, and go find those variants, bestie 🌈💖

Page dated February 2016, filed under HONEY(1) of the General Commands Manual 🌸✨