USAGE:(1)

📦 version 0.2009, in debian bookworm, debian trixie, ubuntu jammy, ubuntu noble, ubuntu resolute, ubuntu stonking

✨ NAME ✨

Hiii bestie, the manual is all about EDTSurf 💖 and it's giving quick and accurate construction of macromolecular surfaces 🦋

🎀 SYNOPSIS 🎀

EDTSurf -i pdbname ...

🌸 DESCRIPTION 🌸

Okay so EDTSurf is an open source program that builds triangulated surfaces for macromolecules 🧚 It can generate three major macromolecular surfaces: the van der Waals surface, the solvent-accessible surface, and the molecular surface (aka the solvent-excluded surface) ✨ EDTsurf also finds cavities that sit inside macromolecules, which is lowkey iconic 💅

💜 OPTIONS 💜

  • -o outname — give it the name you want for your outputs 🍓
  • -t — pick your build mode 🔥
    • 1-MC
    • 2-VCMC
  • -s — pick your surface type 👑
    • 1-VWS
    • 2-SAS
    • 3-MS
    • 4-SES
  • -c — pick your chain style 🌈
    • 1-pure
    • 2-atom
    • 3-chain
  • -p probe radius [0,2.0] — set your probe radius, anywhere from [0,2.0] 🫶
  • -f scale factor (0,20.0] — set your scale factor, anywhere from (0,20.0] ✨
  • -h — choose your in and out vibe 🦋
    • 1-in and out
    • 2-out
    • 3-in

And here's where your files land, bestie 🧚

  • output1: outname.ply
  • output2: outname.asa
  • output3: outname-cav.pdb

Manual dated January 2014 for EDTSurf 💖 That's the tea, go build some surfaces, bestie 🫶💅✨

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